Installing the QIIME 2 Core 2023.5 distribution using WSL

Native conda installation

Installing Miniconda

https://docs.conda.io/en/latest/miniconda.html

Miniconda — conda documentation

Miniconda3 Linux 64-bit

$ wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
:
$ chmod +x Miniconda3-latest-Linux-x86_64.sh
$ ./Miniconda3-latest-Linux-x86_64.sh
:
Miniconda3 will now be installed into this location:
/home/jylee/miniconda3

  - Press ENTER to confirm the location
  - Press CTRL-C to abort the installation
  - Or specify a different location below

[/home/user/miniconda3] >>>
PREFIX=/home/user/miniconda3
Unpacking payload ...

Installing base environment...

Downloading and Extracting Packages
Downloading and Extracting Packages

Preparing transaction: done
Executing transaction: done
installation finished.
Do you wish the installer to initialize Miniconda3
by running conda init? [yes|no]
[no] >>> yes
no change     /home/user/miniconda3/condabin/conda
no change     /home/user/miniconda3/bin/conda
no change     /home/user/miniconda3/bin/conda-env
no change     /home/user/miniconda3/bin/activate
no change     /home/user/miniconda3/bin/deactivate
no change     /home/user/miniconda3/etc/profile.d/conda.sh
no change     /home/user/miniconda3/etc/fish/conf.d/conda.fish
no change     /home/user/miniconda3/shell/condabin/Conda.psm1
no change     /home/user/miniconda3/shell/condabin/conda-hook.ps1
no change     /home/user/miniconda3/lib/python3.11/site-packages/xontrib/conda.xsh
no change     /home/user/miniconda3/etc/profile.d/conda.csh
modified      /home/user/.bashrc

==> For changes to take effect, close and re-open your current shell. <==

If you'd prefer that conda's base environment not be activated on startup,
   set the auto_activate_base parameter to false:

conda config --set auto_activate_base false

Thank you for installing Miniconda3!

Updating Miniconda

$ conda update conda

Installing wget

$ conda install wget

 

Install QIIME 2 within a conda environment

These instructions are identical to the Linux instructions and are intended for users of the Windows Subsystem for Linux.

$ wget https://data.qiime2.org/distro/core/qiime2-2023.5-py38-linux-conda.yml
$ conda env create -n qiime2-2023.5 --file qiime2-2023.5-py38-linux-conda.yml

OPTIONAL CLEANUP

$ rm qiime2-2023.5-py38-linux-conda.yml

 

Activate the conda environment

$ conda activate qiime2-2023.5
:
$ conda deactivate

Test your installation

$ qiime --help

 

 

How do I update to the newest version of QIIME 2?

In order to update/upgrade to the newest release, you simply install the newest version in a new conda environment by following the instructions above. Then you will have two conda environments, one with the older version of QIIME 2 and one with the newer version.

 

 

※ 터미널을 다시 켤 때마다 base 가상 환경이 기본으로 실행되는 것 해제

$ conda config --set auto_activate_base false