Native conda installation
Installing Miniconda
https://docs.conda.io/en/latest/miniconda.html
Miniconda — conda documentation
Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages, including pip, zlib and a few others. Use the conda in
docs.conda.io
$ wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh : $ chmod +x Miniconda3-latest-Linux-x86_64.sh $ ./Miniconda3-latest-Linux-x86_64.sh : Miniconda3 will now be installed into this location: /home/jylee/miniconda3 - Press ENTER to confirm the location - Press CTRL-C to abort the installation - Or specify a different location below [/home/user/miniconda3] >>> PREFIX=/home/user/miniconda3 Unpacking payload ... Installing base environment... Downloading and Extracting Packages Downloading and Extracting Packages Preparing transaction: done Executing transaction: done installation finished. Do you wish the installer to initialize Miniconda3 by running conda init? [yes|no] [no] >>> yes no change /home/user/miniconda3/condabin/conda no change /home/user/miniconda3/bin/conda no change /home/user/miniconda3/bin/conda-env no change /home/user/miniconda3/bin/activate no change /home/user/miniconda3/bin/deactivate no change /home/user/miniconda3/etc/profile.d/conda.sh no change /home/user/miniconda3/etc/fish/conf.d/conda.fish no change /home/user/miniconda3/shell/condabin/Conda.psm1 no change /home/user/miniconda3/shell/condabin/conda-hook.ps1 no change /home/user/miniconda3/lib/python3.11/site-packages/xontrib/conda.xsh no change /home/user/miniconda3/etc/profile.d/conda.csh modified /home/user/.bashrc ==> For changes to take effect, close and re-open your current shell. <== If you'd prefer that conda's base environment not be activated on startup, set the auto_activate_base parameter to false: conda config --set auto_activate_base false Thank you for installing Miniconda3!
Updating Miniconda
$ conda update conda
Installing wget
$ conda install wget
Install QIIME 2 within a conda environment
These instructions are identical to the Linux instructions and are intended for users of the Windows Subsystem for Linux.
$ wget https://data.qiime2.org/distro/core/qiime2-2023.5-py38-linux-conda.yml $ conda env create -n qiime2-2023.5 --file qiime2-2023.5-py38-linux-conda.yml
OPTIONAL CLEANUP
$ rm qiime2-2023.5-py38-linux-conda.yml
Activate the conda environment
$ conda activate qiime2-2023.5 : $ conda deactivate
Test your installation
$ qiime --help
How do I update to the newest version of QIIME 2?
In order to update/upgrade to the newest release, you simply install the newest version in a new conda environment by following the instructions above. Then you will have two conda environments, one with the older version of QIIME 2 and one with the newer version.
※ 터미널을 다시 켤 때마다 base 가상 환경이 기본으로 실행되는 것 해제
$ conda config --set auto_activate_base false
'BIO' 카테고리의 다른 글
ASP.NET Core Dockerfile에 QIIME 2 환경 추가하기 (0) | 2023.08.11 |
---|---|
C#에서 Linux 환경에 설치된 QIIME 2 실행하기 (0) | 2023.08.02 |
FASTQ format in QIIME 2 (0) | 2023.08.01 |
QIIME 2 Core concepts (0) | 2023.07.31 |
FASTAQ (0) | 2023.07.31 |